STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO65846.1Hypothetical protein. (159 aa)    
Predicted Functional Partners:
SHO65843.1
Hypothetical protein.
       0.773
SHO65844.1
Hypothetical protein.
       0.773
SHO65845.1
Endonuclease YncB, thermonuclease family.
       0.773
SHO65847.1
HD domain-containing protein.
       0.773
SHO65848.1
Uncharacterized conserved protein, UPF0335 family.
       0.773
SHO65849.1
ATPase family associated with various cellular activities (AAA).
       0.773
SHO65850.1
Hypothetical protein.
       0.773
SHO65851.1
Hypothetical protein.
       0.689
SHO65852.1
Hypothetical protein.
       0.689
SHO65853.1
Chromosome partitioning protein, ParB family.
       0.689
Your Current Organism:
Pseudoxanthobacter soli
NCBI taxonomy Id: 1123029
Other names: P. soli DSM 19599, Pseudoxanthobacter soli DSM 19599
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.