STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO66447.1Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family. (365 aa)    
Predicted Functional Partners:
SHO66446.1
Cytochrome b561.
 
     0.933
hfq
RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
    
 
 0.931
SHO66749.1
Cytochrome P450 / NADPH-cytochrome P450 reductase.
  
 
 0.895
SHO59826.1
Isocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family.
   
 0.845
SHO64831.1
Glycolate oxidase.
   
 0.769
SHO64834.1
Glycolate oxidase FAD binding subunit.
   
 0.769
SHO63613.1
Peroxiredoxin (alkyl hydroperoxide reductase subunit C).
   
 
 0.733
SHO66444.1
Transmembrane transcriptional regulator (anti-sigma factor RsiW).
 
    0.733
SHO59848.1
1-Cys peroxiredoxin.
   
 
 0.727
SHO66445.1
RNA polymerase sigma-70 factor, ECF subfamily.
     
 0.683
Your Current Organism:
Pseudoxanthobacter soli
NCBI taxonomy Id: 1123029
Other names: P. soli DSM 19599, Pseudoxanthobacter soli DSM 19599
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.