STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO67172.1Type VI secretion system protein ImpK. (509 aa)    
Predicted Functional Partners:
SHO63239.1
Chemotaxis protein MotA.
  
 0.995
SHO67177.1
Type VI secretion system protein ImpC.
 
  
 0.993
SHO67178.1
Type VI secretion system protein ImpD.
 
  
 0.993
SHO67176.1
Type VI secretion system protein ImpB.
 
  
 0.992
SHO67179.1
Type VI secretion system protein ImpE.
 
  
 0.990
SHO67161.1
Type VI secretion system protein VasD.
 
  
 0.987
SHO67171.1
Type VI secretion system protein ImpJ.
  
 0.987
SHO67174.1
Type VI secretion system protein ImpL.
 
 
 0.987
SHO67168.1
Type VI secretion system secreted protein VgrG.
 
  
 0.986
SHO67181.1
Type VI secretion system protein ImpG.
 
  
 0.983
Your Current Organism:
Pseudoxanthobacter soli
NCBI taxonomy Id: 1123029
Other names: P. soli DSM 19599, Pseudoxanthobacter soli DSM 19599
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.