STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO67253.1D-amino-acid dehydrogenase. (418 aa)    
Predicted Functional Partners:
SHO64354.1
Sarcosine oxidase subunit alpha.
  
 0.986
SHO67220.1
N-methylglutamate dehydrogenase subunit C; Belongs to the GcvT family.
  
 0.986
SHO59947.1
Glutamate synthase (NADPH/NADH) large chain.
  
 
 0.830
SHO67252.1
Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family.
 
    0.709
SHO61131.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
 0.614
SHO61132.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
   
 
 0.614
SHO67254.1
Nucleoside-diphosphate-sugar epimerase.
       0.547
SHO64356.1
Sarcosine oxidase subunit delta.
  
 0.545
SHO64351.1
Sarcosine oxidase subunit gamma.
  
  0.497
SHO67221.1
N-methylglutamate dehydrogenase subunit B.
  
  0.495
Your Current Organism:
Pseudoxanthobacter soli
NCBI taxonomy Id: 1123029
Other names: P. soli DSM 19599, Pseudoxanthobacter soli DSM 19599
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.