STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHO67591.1Threonine/homoserine/homoserine lactone efflux protein. (212 aa)    
Predicted Functional Partners:
SHO65885.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
     0.658
SHO67592.1
Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family.
       0.574
SHO65196.1
Hypothetical protein.
  
     0.429
SHO67590.1
Hypothetical protein.
       0.413
Your Current Organism:
Pseudoxanthobacter soli
NCBI taxonomy Id: 1123029
Other names: P. soli DSM 19599, Pseudoxanthobacter soli DSM 19599
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.