STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK90886.1Formate dehydrogenase major subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (973 aa)    
Predicted Functional Partners:
SFK90901.1
Formate dehydrogenase iron-sulfur subunit.
 
 0.999
SFK90907.1
Formate dehydrogenase subunit gamma.
 
 0.999
SFK90549.1
Fe-S-cluster-containing dehydrogenase component.
 
 0.998
SFK90861.1
Chaperone TorD involved in molybdoenzyme TorA maturation.
 
 0.987
SFK30471.1
Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
 0.979
SFK21553.1
WD-40 repeat-containing protein.
 
 
 0.951
fdhD
FdhD protein; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
 
 0.944
SFK90786.1
4Fe-4S dicluster domain-containing protein.
 
  
 0.928
SFK77817.1
Coenzyme F420 hydrogenase subunit beta.
  
 0.925
SFK96876.1
Sulfur-oxidizing protein SoxX.
 
 0.920
Your Current Organism:
Roseomonas stagni
NCBI taxonomy Id: 1123062
Other names: R. stagni DSM 19981, Roseomonas stagni DSM 19981, Roseomonas stagni HS-69, Roseomonas stagni JCM 15034
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.