STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL05220.1DNA-binding transcriptional regulator, PadR family. (185 aa)    
Predicted Functional Partners:
SFL05210.1
Hypothetical protein.
       0.807
SFK99353.1
Threonine synthase.
  
  
  0.586
SFL05234.1
Aminoacrylate peracid reductase.
       0.541
SFK29773.1
ABC-2 type transport system ATP-binding protein.
 
  
 0.520
cobB
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
  
    0.451
SFK46332.1
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase components; Belongs to the ABC transporter superfamily.
  
  
 0.433
SFK61304.1
ABC-2 type transport system ATP-binding protein.
  
  
 0.433
SFK84138.1
ABC-2 type transport system ATP-binding protein.
  
  
 0.433
SFK21900.1
Transcriptional regulator, HxlR family.
 
  
 0.420
Your Current Organism:
Roseomonas stagni
NCBI taxonomy Id: 1123062
Other names: R. stagni DSM 19981, Roseomonas stagni DSM 19981, Roseomonas stagni HS-69, Roseomonas stagni JCM 15034
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.