STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL12288.1Hypothetical protein. (116 aa)    
Predicted Functional Partners:
SFL12303.1
Hypothetical protein.
       0.800
SFL12314.1
AAA domain-containing protein.
       0.786
SFL12323.1
Hypothetical protein.
       0.742
SFL12281.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.728
SFL12337.1
Helicase conserved C-terminal domain-containing protein.
       0.691
SFL12257.1
Hypothetical protein.
       0.486
SFL12268.1
Transcriptional regulatory protein, C terminal.
       0.486
SFL12365.1
Hypothetical protein.
       0.436
SFL12350.1
Hypothetical protein.
       0.416
Your Current Organism:
Roseomonas stagni
NCBI taxonomy Id: 1123062
Other names: R. stagni DSM 19981, Roseomonas stagni DSM 19981, Roseomonas stagni HS-69, Roseomonas stagni JCM 15034
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.