STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPX87642.1Transcriptional regulator, GntR family. (248 aa)    
Predicted Functional Partners:
EPX87646.1
Putative metal-dependent hydrolase of the TIM-barrel fold protein.
     0.864
EPX87643.1
Dihydrodipicolinate synthase/N-acetylneuraminate lyase; Belongs to the DapA family.
 
   
 0.862
EPX87644.1
Dihydrodipicolinate synthase/N-acetylneuraminate lyase.
 
   
 0.856
EPX87641.1
Nucleoside-diphosphate-sugar epimerase.
 
     0.799
EPX83248.1
Flavodoxin reductase (ferredoxin-NADPH reductase) family 1.
    
  0.761
EPX87608.1
Transcriptional regulator, GntR family.
  
  
 0.751
EPX87648.1
L-alanine-DL-glutamate epimerase and related enzyme of enolase superfamily; overlaps another CDS with the same product name; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.690
EPX87645.1
L-alanine-DL-glutamate epimerase and related enzyme of enolase superfamily.
 
     0.679
EPX87647.1
L-alanine-DL-glutamate epimerase and related enzyme of enolase superfamily; overlaps another CDS with the same product name; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.672
EPX87156.1
Transcriptional regulator, GntR family.
  
  
 0.640
Your Current Organism:
Rubellimicrobium thermophilum
NCBI taxonomy Id: 1123069
Other names: R. thermophilum DSM 16684, Rubellimicrobium thermophilum DSM 16684
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