Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EPX84121.1 | EPX87539.1 | ruthe_02331 | ruthe_00402 | Parvulin-like peptidyl-prolyl isomerase. | Periplasmic protease; Overlaps another CDS with the same product name. | 0.528 |
| EPX84121.1 | EPX87540.1 | ruthe_02331 | ruthe_00403 | Parvulin-like peptidyl-prolyl isomerase. | Hypothetical protein. | 0.517 |
| EPX85188.1 | EPX87538.1 | ruthe_01780 | ruthe_00401 | Phenylalanyl-tRNA synthetase beta subunit. | Periplasmic protease; Overlaps another CDS with the same product name. | 0.514 |
| EPX85188.1 | EPX87539.1 | ruthe_01780 | ruthe_00402 | Phenylalanyl-tRNA synthetase beta subunit. | Periplasmic protease; Overlaps another CDS with the same product name. | 0.514 |
| EPX85188.1 | EPX87540.1 | ruthe_01780 | ruthe_00403 | Phenylalanyl-tRNA synthetase beta subunit. | Hypothetical protein. | 0.514 |
| EPX85188.1 | rsfS | ruthe_01780 | ruthe_00408 | Phenylalanyl-tRNA synthetase beta subunit. | Iojap-like ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.419 |
| EPX85188.1 | secD | ruthe_01780 | ruthe_00600 | Phenylalanyl-tRNA synthetase beta subunit. | Protein-export membrane protein, SecD/SecF family; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.958 |
| EPX87538.1 | EPX85188.1 | ruthe_00401 | ruthe_01780 | Periplasmic protease; Overlaps another CDS with the same product name. | Phenylalanyl-tRNA synthetase beta subunit. | 0.514 |
| EPX87538.1 | EPX87539.1 | ruthe_00401 | ruthe_00402 | Periplasmic protease; Overlaps another CDS with the same product name. | Periplasmic protease; Overlaps another CDS with the same product name. | 0.989 |
| EPX87538.1 | EPX87540.1 | ruthe_00401 | ruthe_00403 | Periplasmic protease; Overlaps another CDS with the same product name. | Hypothetical protein. | 0.992 |
| EPX87538.1 | EPX87541.1 | ruthe_00401 | ruthe_00404 | Periplasmic protease; Overlaps another CDS with the same product name. | Membrane-bound metallopeptidase. | 0.875 |
| EPX87538.1 | EPX87542.1 | ruthe_00401 | ruthe_00405 | Periplasmic protease; Overlaps another CDS with the same product name. | Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the BPG-independent phosphoglycerate mutase family. | 0.790 |
| EPX87538.1 | EPX87543.1 | ruthe_00401 | ruthe_00406 | Periplasmic protease; Overlaps another CDS with the same product name. | Phosphoglyceromutase. | 0.790 |
| EPX87538.1 | rlmH | ruthe_00401 | ruthe_00407 | Periplasmic protease; Overlaps another CDS with the same product name. | Hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. | 0.575 |
| EPX87538.1 | rsfS | ruthe_00401 | ruthe_00408 | Periplasmic protease; Overlaps another CDS with the same product name. | Iojap-like ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.592 |
| EPX87538.1 | secD | ruthe_00401 | ruthe_00600 | Periplasmic protease; Overlaps another CDS with the same product name. | Protein-export membrane protein, SecD/SecF family; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.445 |
| EPX87539.1 | EPX84121.1 | ruthe_00402 | ruthe_02331 | Periplasmic protease; Overlaps another CDS with the same product name. | Parvulin-like peptidyl-prolyl isomerase. | 0.528 |
| EPX87539.1 | EPX85188.1 | ruthe_00402 | ruthe_01780 | Periplasmic protease; Overlaps another CDS with the same product name. | Phenylalanyl-tRNA synthetase beta subunit. | 0.514 |
| EPX87539.1 | EPX87538.1 | ruthe_00402 | ruthe_00401 | Periplasmic protease; Overlaps another CDS with the same product name. | Periplasmic protease; Overlaps another CDS with the same product name. | 0.989 |
| EPX87539.1 | EPX87540.1 | ruthe_00402 | ruthe_00403 | Periplasmic protease; Overlaps another CDS with the same product name. | Hypothetical protein. | 0.994 |
page 1 of 4