STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPX87179.1Overlaps another CDS with the same product name. (212 aa)    
Predicted Functional Partners:
EPX87178.1
Overlaps another CDS with the same product name.
     0.994
EPX87591.1
Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family.
   
 0.643
fusA
Translation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...]
   
 
 0.581
EPX87177.1
Putative hemolysin.
       0.572
EPX87527.1
NADH:flavin oxidoreductase, Old Yellow Enzyme family.
    
 
 0.564
EPX84514.1
NADH:flavin oxidoreductase, Old Yellow Enzyme family.
    
 
 0.548
EPX82845.1
Hypothetical protein.
    
 
 0.548
EPX82846.1
NADH:flavin oxidoreductase, Old Yellow Enzyme family.
    
 
 0.548
EPX84899.1
Aromatic amino acid aminotransferase apoenzyme.
    
 0.522
EPX87180.1
Hypothetical protein.
       0.521
Your Current Organism:
Rubellimicrobium thermophilum
NCBI taxonomy Id: 1123069
Other names: R. thermophilum DSM 16684, Rubellimicrobium thermophilum DSM 16684
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.