STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPX86056.1Superfamily II RNA helicase. (950 aa)    
Predicted Functional Partners:
EPX87189.1
Heat shock protein Hsp15.
 
     0.695
EPX87187.1
Transcriptional regulator, CarD family.
 
     0.673
EPX87171.1
DnaJ-class molecular chaperone; Containing C-terminal Zn finger domain protein.
  
     0.637
EPX87166.1
Cobalamin biosynthesis protein CobT; Nicotinate-mononucleotide 5,6-dimethylbenzimidazole phosphoribosyltransferase.
  
     0.584
EPX87188.1
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.574
EPX87275.1
Uncharacterized protein putative in bacteria.
  
     0.571
EPX82517.1
N-formylglutamate amidohydrolase.
  
     0.503
lysS
lysyl-tRNA synthetase, class I; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.494
EPX86441.1
Cobyrinic acid a,c-diamide synthase.
   
    0.487
EPX85076.1
Uncharacterized protein putative in bacteria.
  
     0.481
Your Current Organism:
Rubellimicrobium thermophilum
NCBI taxonomy Id: 1123069
Other names: R. thermophilum DSM 16684, Rubellimicrobium thermophilum DSM 16684
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