Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EPX83397.1 | EPX85956.1 | ruthe_02690 | ruthe_01678 | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 23S rRNA methylase. | 0.960 |
| EPX83397.1 | EPX86234.1 | ruthe_02690 | ruthe_01044 | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | NOL1/NOP2/sun family; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.946 |
| EPX83397.1 | EPX87591.1 | ruthe_02690 | ruthe_00296 | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | 0.962 |
| EPX83397.1 | rplC | ruthe_02690 | ruthe_02438 | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.999 |
| EPX83397.1 | rplM | ruthe_02690 | ruthe_01027 | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| EPX83397.1 | rplV | ruthe_02690 | ruthe_02443 | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
| EPX83397.1 | rplW | ruthe_02690 | ruthe_02440 | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
| EPX83397.1 | rplX | ruthe_02690 | ruthe_02449 | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.999 |
| EPX83397.1 | rpmC | ruthe_02690 | ruthe_02446 | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family. | 0.999 |
| EPX83397.1 | rpmD | ruthe_02690 | ruthe_02456 | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | LSU ribosomal protein L30P. | 0.999 |
| EPX85956.1 | EPX83397.1 | ruthe_01678 | ruthe_02690 | 23S rRNA methylase. | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.960 |
| EPX85956.1 | EPX86234.1 | ruthe_01678 | ruthe_01044 | 23S rRNA methylase. | NOL1/NOP2/sun family; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.969 |
| EPX85956.1 | EPX87591.1 | ruthe_01678 | ruthe_00296 | 23S rRNA methylase. | Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family. | 0.969 |
| EPX85956.1 | rplC | ruthe_01678 | ruthe_02438 | 23S rRNA methylase. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.962 |
| EPX85956.1 | rplM | ruthe_01678 | ruthe_01027 | 23S rRNA methylase. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.959 |
| EPX85956.1 | rplV | ruthe_01678 | ruthe_02443 | 23S rRNA methylase. | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.963 |
| EPX85956.1 | rplW | ruthe_01678 | ruthe_02440 | 23S rRNA methylase. | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.963 |
| EPX85956.1 | rplX | ruthe_01678 | ruthe_02449 | 23S rRNA methylase. | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.963 |
| EPX85956.1 | rpmC | ruthe_01678 | ruthe_02446 | 23S rRNA methylase. | LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family. | 0.945 |
| EPX85956.1 | rpmD | ruthe_01678 | ruthe_02456 | 23S rRNA methylase. | LSU ribosomal protein L30P. | 0.980 |
page 1 of 6