Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EPX83244.1 | EPX86519.1 | ruthe_02868 | ruthe_01334 | Phosphate ABC transporter membrane protein 2, PhoT family; TC 3.A.1.7.1. | Exonuclease RecJ. | 0.633 |
| EPX84451.1 | EPX86104.1 | ruthe_02255 | ruthe_00912 | DNA polymerase III, beta subunit. | ATP-dependent DNA helicase RecG. | 0.469 |
| EPX84451.1 | EPX86176.1 | ruthe_02255 | ruthe_00985 | DNA polymerase III, beta subunit. | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.655 |
| EPX84451.1 | EPX86519.1 | ruthe_02255 | ruthe_01334 | DNA polymerase III, beta subunit. | Exonuclease RecJ. | 0.637 |
| EPX84451.1 | EPX87873.1 | ruthe_02255 | ruthe_00078 | DNA polymerase III, beta subunit. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.686 |
| EPX84451.1 | mfd | ruthe_02255 | ruthe_00941 | DNA polymerase III, beta subunit. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.431 |
| EPX85880.1 | EPX85881.1 | ruthe_01601 | ruthe_01602 | Primosomal protein N; Overlaps another CDS with the same product name. | Primosomal protein N; Overlaps another CDS with the same product name. | 0.994 |
| EPX85880.1 | EPX86176.1 | ruthe_01601 | ruthe_00985 | Primosomal protein N; Overlaps another CDS with the same product name. | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.953 |
| EPX85880.1 | EPX86519.1 | ruthe_01601 | ruthe_01334 | Primosomal protein N; Overlaps another CDS with the same product name. | Exonuclease RecJ. | 0.665 |
| EPX85880.1 | EPX87873.1 | ruthe_01601 | ruthe_00078 | Primosomal protein N; Overlaps another CDS with the same product name. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.496 |
| EPX85880.1 | mfd | ruthe_01601 | ruthe_00941 | Primosomal protein N; Overlaps another CDS with the same product name. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.444 |
| EPX85881.1 | EPX85880.1 | ruthe_01602 | ruthe_01601 | Primosomal protein N; Overlaps another CDS with the same product name. | Primosomal protein N; Overlaps another CDS with the same product name. | 0.994 |
| EPX85881.1 | EPX86176.1 | ruthe_01602 | ruthe_00985 | Primosomal protein N; Overlaps another CDS with the same product name. | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.946 |
| EPX85881.1 | EPX86519.1 | ruthe_01602 | ruthe_01334 | Primosomal protein N; Overlaps another CDS with the same product name. | Exonuclease RecJ. | 0.617 |
| EPX85881.1 | EPX87873.1 | ruthe_01602 | ruthe_00078 | Primosomal protein N; Overlaps another CDS with the same product name. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.496 |
| EPX85881.1 | mfd | ruthe_01602 | ruthe_00941 | Primosomal protein N; Overlaps another CDS with the same product name. | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.535 |
| EPX86104.1 | EPX84451.1 | ruthe_00912 | ruthe_02255 | ATP-dependent DNA helicase RecG. | DNA polymerase III, beta subunit. | 0.469 |
| EPX86104.1 | EPX86176.1 | ruthe_00912 | ruthe_00985 | ATP-dependent DNA helicase RecG. | Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.603 |
| EPX86104.1 | EPX86519.1 | ruthe_00912 | ruthe_01334 | ATP-dependent DNA helicase RecG. | Exonuclease RecJ. | 0.628 |
| EPX86104.1 | EPX87873.1 | ruthe_00912 | ruthe_00078 | ATP-dependent DNA helicase RecG. | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.469 |
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