STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPX86659.1Polyhydroxyalkanoate depolymerase, intracellular. (490 aa)    
Predicted Functional Partners:
EPX86658.1
poly(R)-hydroxyalkanoic acid synthase, class I.
 
  
 0.991
EPX86657.1
Hypothetical protein.
 
   
 0.892
EPX86656.1
Polyhydroxyalkanoate synthesis repressor PhaR.
 
   
 0.861
EPX86513.1
Flp pilus assembly protein TadG.
  
     0.492
EPX84281.1
Lipoprotein.
  
  
  0.487
EPX85894.1
Hypothetical protein.
  
     0.470
EPX84195.1
Hypothetical protein; (DUF2007.
   
    0.416
EPX86139.1
3-hydroxybutyrate dehydrogenase.
  
   
 0.408
EPX87475.1
Hypothetical protein.
      
 0.400
fur
Manganese uptake regulator, Fur family; Belongs to the Fur family.
      
 0.400
Your Current Organism:
Rubellimicrobium thermophilum
NCBI taxonomy Id: 1123069
Other names: R. thermophilum DSM 16684, Rubellimicrobium thermophilum DSM 16684
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