EPX84859.1 protein (Rubellimicrobium thermophilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EPX84859.1

ABC-type spermidine/putrescine transport system, permease component I. (120 aa)

Predicted Functional Partners:

EPX84858.1

0.977

EPX84861.1

0.885

EPX83695.1

0.873

EPX86214.1

0.866

EPX82716.1

0.861

EPX84509.1

0.817

EPX82715.1

0.806

EPX86534.1

0.792

EPX83696.1

0.747

EPX84274.1

0.734

Your Current Organism:

Rubellimicrobium thermophilum

NCBI taxonomy Id: 1123069
Other names: R. thermophilum DSM 16684, Rubellimicrobium thermophilum DSM 16684

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EPX82715.1	EPX82716.1	ruthe_03176	ruthe_03177	Spermidine/putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	ABC-type spermidine/putrescine transport system, permease component II.	0.996
EPX82715.1	EPX83695.1	ruthe_03176	ruthe_02646	Spermidine/putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	ABC-type spermidine/putrescine transport system, permease component II.	0.985
EPX82715.1	EPX83696.1	ruthe_03176	ruthe_02647	Spermidine/putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	ABC-type spermidine/putrescine transport system, permease component I.	0.899
EPX82715.1	EPX84274.1	ruthe_03176	ruthe_02487	Spermidine/putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	ABC-type spermidine/putrescine transport system, permease component II.	0.974
EPX82715.1	EPX84509.1	ruthe_03176	ruthe_02189	Spermidine/putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	ABC-type spermidine/putrescine transport system, permease component II.	0.987
EPX82715.1	EPX84858.1	ruthe_03176	ruthe_01855	Spermidine/putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	ABC-type spermidine/putrescine transport system, permease component II.	0.937
EPX82715.1	EPX84859.1	ruthe_03176	ruthe_01856	Spermidine/putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	ABC-type spermidine/putrescine transport system, permease component I.	0.806
EPX82715.1	EPX86214.1	ruthe_03176	ruthe_01024	Spermidine/putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	ABC-type spermidine/putrescine transport system, permease component II.	0.985
EPX82715.1	EPX86534.1	ruthe_03176	ruthe_01350	Spermidine/putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	ABC-type spermidine/putrescine transport system, permease component II.	0.913
EPX82716.1	EPX82715.1	ruthe_03177	ruthe_03176	ABC-type spermidine/putrescine transport system, permease component II.	Spermidine/putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	0.996
EPX82716.1	EPX83695.1	ruthe_03177	ruthe_02646	ABC-type spermidine/putrescine transport system, permease component II.	ABC-type spermidine/putrescine transport system, permease component II.	0.520
EPX82716.1	EPX83696.1	ruthe_03177	ruthe_02647	ABC-type spermidine/putrescine transport system, permease component II.	ABC-type spermidine/putrescine transport system, permease component I.	0.985
EPX82716.1	EPX84274.1	ruthe_03177	ruthe_02487	ABC-type spermidine/putrescine transport system, permease component II.	ABC-type spermidine/putrescine transport system, permease component II.	0.472
EPX82716.1	EPX84858.1	ruthe_03177	ruthe_01855	ABC-type spermidine/putrescine transport system, permease component II.	ABC-type spermidine/putrescine transport system, permease component II.	0.550
EPX82716.1	EPX84859.1	ruthe_03177	ruthe_01856	ABC-type spermidine/putrescine transport system, permease component II.	ABC-type spermidine/putrescine transport system, permease component I.	0.861
EPX82716.1	EPX84861.1	ruthe_03177	ruthe_01858	ABC-type spermidine/putrescine transport system, permease component II.	Spermidine/putrescine-binding periplasmic protein.	0.730
EPX83695.1	EPX82715.1	ruthe_02646	ruthe_03176	ABC-type spermidine/putrescine transport system, permease component II.	Spermidine/putrescine-binding periplasmic protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	0.985
EPX83695.1	EPX82716.1	ruthe_02646	ruthe_03177	ABC-type spermidine/putrescine transport system, permease component II.	ABC-type spermidine/putrescine transport system, permease component II.	0.520
EPX83695.1	EPX83696.1	ruthe_02646	ruthe_02647	ABC-type spermidine/putrescine transport system, permease component II.	ABC-type spermidine/putrescine transport system, permease component I.	0.997
EPX83695.1	EPX84509.1	ruthe_02646	ruthe_02189	ABC-type spermidine/putrescine transport system, permease component II.	ABC-type spermidine/putrescine transport system, permease component II.	0.517