STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPX84512.1Transcriptional regulator, TetR family. (187 aa)    
Predicted Functional Partners:
EPX84506.1
Zn-dependent hydrolase, including glyoxylase.
 
     0.872
EPX84511.1
Spermidine/putrescine-binding periplasmic protein.
 
     0.870
EPX84509.1
ABC-type spermidine/putrescine transport system, permease component II.
 
     0.745
EPX84507.1
ABC-type spermidine/putrescine transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
     0.733
EPX84510.1
ABC-type spermidine/putrescine transport system, permease component I.
 
     0.716
EPX84508.1
ABC-type spermidine/putrescine transport system, ATPase component.
 
     0.619
EPX83314.1
PAS domain S-box.
    
 
 0.457
EPX82375.1
Polyketide synthase module/related protein.
     
 0.452
EPX86472.1
Na+/proline symporter.
    
 
 0.449
EPX82790.1
His Kinase A (phospho-acceptor) domain/PAS fold/Response regulator receiver domain/Histidine kinase; DNA gyrase B-, and HSP90-like ATPase.
    
 
 0.448
Your Current Organism:
Rubellimicrobium thermophilum
NCBI taxonomy Id: 1123069
Other names: R. thermophilum DSM 16684, Rubellimicrobium thermophilum DSM 16684
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.