STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPX84466.1Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (222 aa)    
Predicted Functional Partners:
EPX87491.1
Transketolase subunit A.
  
 0.996
EPX86312.1
Transketolase; Overlaps another CDS with the same product name.
 0.969
EPX87777.1
Transketolase; Belongs to the transketolase family.
 0.956
rpiA
Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
  
 0.942
EPX87280.1
6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
   
 0.938
EPX86313.1
Transketolase; Overlaps another CDS with the same product name.
 
 0.914
EPX87774.1
Sugar-phosphate isomerase, RpiB/LacA/LacB family.
  
 
 0.908
EPX87492.1
Transketolase subunit B.
 
 
 0.901
EPX86064.1
Sugar kinase, ribokinase family.
  
 0.896
EPX83164.1
Transketolase; N-terminus.
  
 0.883
Your Current Organism:
Rubellimicrobium thermophilum
NCBI taxonomy Id: 1123069
Other names: R. thermophilum DSM 16684, Rubellimicrobium thermophilum DSM 16684
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