STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPX83288.1Hypothetical protein. (137 aa)    
Predicted Functional Partners:
EPX83287.1
Hypothetical protein.
     0.986
lcdH
3-hydroxyacyl-CoA dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
 
 0.926
EPX83188.1
Hypothetical protein.
  
     0.766
EPX87376.1
3-oxoacid CoA-transferase, A subunit.
    
 0.721
EPX87374.1
3-oxoacid CoA-transferase, B subunit.
    
  0.714
EPX83289.1
Transcriptional regulator; Containing an amidase domain and an AraC-type DNA-binding HTH domain protein; overlaps another CDS with the same product name.
 
     0.631
EPX83284.1
CoA binding domain/Succinyl-CoA ligase like flavodoxin domain protein.
 
     0.597
EPX83216.1
3-hydroxyacyl-CoA dehydrogenase.
 
  
 0.591
EPX83285.1
Acyl-CoA dehydrogenase.
 
     0.561
EPX83290.1
Transcriptional regulator; Containing an amidase domain and an AraC-type DNA-binding HTH domain protein; overlaps another CDS with the same product name.
       0.544
Your Current Organism:
Rubellimicrobium thermophilum
NCBI taxonomy Id: 1123069
Other names: R. thermophilum DSM 16684, Rubellimicrobium thermophilum DSM 16684
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