STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EPX82944.1DNA modification methylase. (439 aa)    
Predicted Functional Partners:
EPX82946.1
Hypothetical protein.
 
     0.942
EPX84440.1
CobQ/CobB/MinD/ParA nucleotide binding domain protein; Overlaps another CDS with the same product name.
  
 
 0.884
EPX84441.1
CobQ/CobB/MinD/ParA nucleotide binding domain protein; Overlaps another CDS with the same product name.
  
 
 0.884
EPX82945.1
Site-specific DNA methylase.
 
  
 0.871
EPX84311.1
Hypothetical protein; (DUF3489.
  
   0.799
EPX82948.1
Hypothetical protein; (DUF3489.
  
   0.797
EPX84315.1
Bacteriophage tail assembly protein.
   
 0.769
EPX84310.1
Hypothetical protein.
 
     0.757
EPX82941.1
Hypothetical protein.
 
    0.757
EPX82951.1
Bacteriophage tail assembly protein.
   
 0.718
Your Current Organism:
Rubellimicrobium thermophilum
NCBI taxonomy Id: 1123069
Other names: R. thermophilum DSM 16684, Rubellimicrobium thermophilum DSM 16684
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.