STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000425365_03506Unannotated protein. (468 aa)    
Predicted Functional Partners:
GCA_000425365_01936
Unannotated protein.
     
 0.916
GCA_000425365_03188
Unannotated protein.
     
 0.683
GCA_000425365_02222
Unannotated protein.
    
 0.641
GCA_000425365_03560
Unannotated protein.
     
 0.611
GCA_000425365_02079
Unannotated protein.
     
 0.587
GCA_000425365_01019
Unannotated protein.
     
 0.568
GCA_000425365_02432
Unannotated protein.
     
 0.541
GCA_000425365_01219
Unannotated protein.
     
 0.540
GCA_000425365_03622
Unannotated protein.
     
 0.522
Your Current Organism:
Rubritepida flocculans
NCBI taxonomy Id: 1123072
Other names: R. flocculans DSM 14296, Rubritepida flocculans DSM 14296
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.