STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM32486.1Proline racemase; Belongs to the proline racemase family. (334 aa)    
Predicted Functional Partners:
SHM32518.1
Sarcosine oxidase subunit beta.
 
  
 0.942
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.883
SHM32690.1
Sarcosine oxidase subunit alpha.
 
  
  0.831
SHM32642.1
Sarcosine oxidase subunit alpha.
 
  
  0.830
SHL82933.1
Ornithine cyclodeaminase.
 
  
 0.816
SHM32385.1
Dihydrodipicolinate synthetase family protein; Belongs to the DapA family.
 
     0.775
SHM32426.1
Malate + proton/lactate + sodium antiporter, NhaC family (TC 2.A.35.1.2).
 
     0.771
SHM32455.1
Hypothetical protein.
       0.763
SHM32596.1
BFD-like [2Fe-2S] binding domain-containing protein.
 
     0.749
SHL41331.1
L-proline dehydrogenase.
    
 0.746
Your Current Organism:
Salinicoccus alkaliphilus
NCBI taxonomy Id: 1123231
Other names: S. alkaliphilus DSM 16010, Salinicoccus alkaliphilus DSM 16010, Salinicoccus alkaliphilus T8, Salinicoccus alkaliphilus str. DSM 16010, Salinicoccus alkaliphilus strain DSM 16010, unidentified Hailaer soda lake bacterium T8
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