STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000420765_00555Unannotated protein. (400 aa)    
Predicted Functional Partners:
GCA_000420765_02100
Unannotated protein.
 
 
 0.979
GCA_000420765_02322
Unannotated protein.
    
 0.950
GCA_000420765_00368
Unannotated protein.
  
 
 0.874
GCA_000420765_02565
Unannotated protein.
   
 
 0.863
GCA_000420765_00103
Unannotated protein.
  
  0.849
GCA_000420765_01541
Unannotated protein.
  
 
 0.849
GCA_000420765_01353
Unannotated protein.
   
 0.847
GCA_000420765_00313
Unannotated protein.
  
 0.835
GCA_000420765_01871
Unannotated protein.
  
 0.833
GCA_000420765_02555
Unannotated protein.
   
 
 0.825
Your Current Organism:
Sandarakinorhabdus limnophila
NCBI taxonomy Id: 1123240
Other names: S. limnophila DSM 17366, Sandarakinorhabdus limnophila DSM 17366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.