STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000420765_00810Unannotated protein. (367 aa)    
Predicted Functional Partners:
GCA_000420765_02322
Unannotated protein.
    
 0.908
GCA_000420765_00808
Unannotated protein.
  
    0.709
GCA_000420765_00809
Unannotated protein.
       0.686
GCA_000420765_00811
Unannotated protein.
       0.648
GCA_000420765_00812
Unannotated protein.
       0.648
GCA_000420765_02077
Unannotated protein.
  
 
 0.648
GCA_000420765_01509
Unannotated protein.
  
 
 0.605
GCA_000420765_00807
Unannotated protein.
       0.537
GCA_000420765_01508
Unannotated protein.
   
 
 0.502
GCA_000420765_00813
Unannotated protein.
       0.472
Your Current Organism:
Sandarakinorhabdus limnophila
NCBI taxonomy Id: 1123240
Other names: S. limnophila DSM 17366, Sandarakinorhabdus limnophila DSM 17366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.