STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000420765_02346Unannotated protein. (312 aa)    
Predicted Functional Partners:
GCA_000420765_01204
Unannotated protein.
    
 0.775
GCA_000420765_00251
Unannotated protein.
 
  
 0.727
GCA_000420765_01501
Unannotated protein.
 
  
 0.725
GCA_000420765_00960
Unannotated protein.
  
 
 0.700
GCA_000420765_02347
Unannotated protein.
       0.696
GCA_000420765_01049
Unannotated protein.
    
 0.681
GCA_000420765_00847
Unannotated protein.
  
  
 0.497
GCA_000420765_02348
Unannotated protein.
       0.457
GCA_000420765_02023
Unannotated protein.
 
   
 0.417
Your Current Organism:
Sandarakinorhabdus limnophila
NCBI taxonomy Id: 1123240
Other names: S. limnophila DSM 17366, Sandarakinorhabdus limnophila DSM 17366
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.