Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHE36462.1 | SHE36539.1 | SAMN02745190_00273 | SAMN02745190_00275 | Diguanylate cyclase (GGDEF) domain-containing protein. | Nitroreductase. | 0.727 |
SHE36462.1 | SHE36570.1 | SAMN02745190_00273 | SAMN02745190_00276 | Diguanylate cyclase (GGDEF) domain-containing protein. | cob(I)alamin adenosyltransferase. | 0.561 |
SHE36462.1 | SHE36602.1 | SAMN02745190_00273 | SAMN02745190_00277 | Diguanylate cyclase (GGDEF) domain-containing protein. | Competence protein ComEA. | 0.550 |
SHE36462.1 | SHE36635.1 | SAMN02745190_00273 | SAMN02745190_00278 | Diguanylate cyclase (GGDEF) domain-containing protein. | Competence protein ComEC. | 0.551 |
SHE36462.1 | queF | SAMN02745190_00273 | SAMN02745190_00274 | Diguanylate cyclase (GGDEF) domain-containing protein. | 7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily. | 0.798 |
SHE36539.1 | SHE36462.1 | SAMN02745190_00275 | SAMN02745190_00273 | Nitroreductase. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.727 |
SHE36539.1 | SHE36570.1 | SAMN02745190_00275 | SAMN02745190_00276 | Nitroreductase. | cob(I)alamin adenosyltransferase. | 0.700 |
SHE36539.1 | SHE36602.1 | SAMN02745190_00275 | SAMN02745190_00277 | Nitroreductase. | Competence protein ComEA. | 0.578 |
SHE36539.1 | SHE36635.1 | SAMN02745190_00275 | SAMN02745190_00278 | Nitroreductase. | Competence protein ComEC. | 0.578 |
SHE36539.1 | SHE55978.1 | SAMN02745190_00275 | SAMN02745190_00656 | Nitroreductase. | Nitroreductase. | 0.644 |
SHE36539.1 | SHE80917.1 | SAMN02745190_00275 | SAMN02745190_01239 | Nitroreductase. | Nitroreductase. | 0.752 |
SHE36539.1 | SHF17869.1 | SAMN02745190_00275 | SAMN02745190_02031 | Nitroreductase. | NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family. | 0.627 |
SHE36539.1 | SHF29724.1 | SAMN02745190_00275 | SAMN02745190_02322 | Nitroreductase. | NADPH-dependent FMN reductase. | 0.552 |
SHE36539.1 | SHF34195.1 | SAMN02745190_00275 | SAMN02745190_02430 | Nitroreductase. | Nitroreductase. | 0.750 |
SHE36539.1 | queF | SAMN02745190_00275 | SAMN02745190_00274 | Nitroreductase. | 7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). Belongs to the GTP cyclohydrolase I family. QueF type 1 subfamily. | 0.734 |
SHE36570.1 | SHE36462.1 | SAMN02745190_00276 | SAMN02745190_00273 | cob(I)alamin adenosyltransferase. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.561 |
SHE36570.1 | SHE36539.1 | SAMN02745190_00276 | SAMN02745190_00275 | cob(I)alamin adenosyltransferase. | Nitroreductase. | 0.700 |
SHE36570.1 | SHE36602.1 | SAMN02745190_00276 | SAMN02745190_00277 | cob(I)alamin adenosyltransferase. | Competence protein ComEA. | 0.752 |
SHE36570.1 | SHE36635.1 | SAMN02745190_00276 | SAMN02745190_00278 | cob(I)alamin adenosyltransferase. | Competence protein ComEC. | 0.752 |
SHE36570.1 | SHF17869.1 | SAMN02745190_00276 | SAMN02745190_02031 | cob(I)alamin adenosyltransferase. | NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family. | 0.483 |
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