STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF02969.1Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase. (450 aa)    
Predicted Functional Partners:
SHF10104.1
HNH endonuclease.
   
 
 0.857
SHF18395.1
HNH endonuclease.
   
 
 0.857
SHF03007.1
ATP-dependent Clp protease, protease subunit; Belongs to the peptidase S14 family.
       0.773
SHF02935.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
 
     0.698
SHF02858.1
Predicted phosphoesterase.
 
     0.638
SHF02896.1
Calcineurin-like phosphoesterase superfamily protein.
       0.609
SHF02787.1
Predicted nucleotidyltransferase.
       0.470
SHF02820.1
Calcineurin-like phosphoesterase.
       0.470
SHE62681.1
Site-specific DNA recombinase.
 
    0.427
SHE79350.1
Site-specific DNA recombinase.
 
    0.427
Your Current Organism:
Schwartzia succinivorans
NCBI taxonomy Id: 1123243
Other names: S. succinivorans DSM 10502, Schwartzia succinivorans DSM 10502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.