STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000423645_00398Unannotated protein. (116 aa)    
Predicted Functional Partners:
GCA_000423645_00399
Unannotated protein.
       0.835
GCA_000423645_00397
Unannotated protein.
 
     0.759
GCA_000423645_02065
Unannotated protein.
  
     0.696
GCA_000423645_00400
Unannotated protein.
 
     0.677
GCA_000423645_02260
Unannotated protein.
  
     0.662
GCA_000423645_02308
Unannotated protein.
  
     0.599
GCA_000423645_02249
Unannotated protein.
  
    0.571
GCA_000423645_01286
Unannotated protein.
  
     0.532
GCA_000423645_02991
Unannotated protein.
 
     0.529
GCA_000423645_02331
Unannotated protein.
  
     0.523
Your Current Organism:
Sediminimonas qiaohouensis
NCBI taxonomy Id: 1123247
Other names: S. qiaohouensis DSM 21189, Sediminimonas qiaohouensis DSM 21189
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.