STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000380645_00887Unannotated protein. (228 aa)    
Predicted Functional Partners:
GCA_000380645_00885
Unannotated protein.
 
   
 0.857
GCA_000380645_00884
Unannotated protein.
 
     0.855
GCA_000380645_00886
Unannotated protein.
       0.855
GCA_000380645_00883
Unannotated protein.
     
 0.811
GCA_000380645_04806
Unannotated protein.
  
     0.769
GCA_000380645_04930
Unannotated protein.
  
     0.769
GCA_000380645_02648
Unannotated protein.
  
     0.763
GCA_000380645_04782
Unannotated protein.
  
     0.752
GCA_000380645_00874
Unannotated protein.
  
     0.748
GCA_000380645_01253
Unannotated protein.
  
     0.744
Your Current Organism:
Smaragdicoccus niigatensis
NCBI taxonomy Id: 1123258
Other names: S. niigatensis DSM 44881 = NBRC 103563, Smaragdicoccus niigatensis DSM 44881, Smaragdicoccus niigatensis DSM 44881 = NBRC 103563, Smaragdicoccus niigatensis NBRC 103563, Smaragdicoccus niigatensis NBRC 103563 = DSM 44881
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.