STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000380645_02916Unannotated protein. (321 aa)    
Predicted Functional Partners:
GCA_000380645_02917
Unannotated protein.
       0.773
GCA_000380645_03123
Unannotated protein.
 
   
 0.660
GCA_000380645_02918
Unannotated protein.
 
     0.649
GCA_000380645_02914
Unannotated protein.
 
     0.648
GCA_000380645_02915
Unannotated protein.
 
     0.648
GCA_000380645_02061
Unannotated protein.
  
     0.598
GCA_000380645_03079
Unannotated protein.
  
     0.595
GCA_000380645_02913
Unannotated protein.
       0.590
GCA_000380645_02907
Unannotated protein.
 
   
 0.564
GCA_000380645_00865
Unannotated protein.
  
     0.560
Your Current Organism:
Smaragdicoccus niigatensis
NCBI taxonomy Id: 1123258
Other names: S. niigatensis DSM 44881 = NBRC 103563, Smaragdicoccus niigatensis DSM 44881, Smaragdicoccus niigatensis DSM 44881 = NBRC 103563, Smaragdicoccus niigatensis NBRC 103563, Smaragdicoccus niigatensis NBRC 103563 = DSM 44881
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.