STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000380645_03535Unannotated protein. (265 aa)    
Predicted Functional Partners:
GCA_000380645_03821
Unannotated protein.
  
 
 0.842
GCA_000380645_04234
Unannotated protein.
  
 0.820
GCA_000380645_01385
Unannotated protein.
  
 0.814
GCA_000380645_01448
Unannotated protein.
    
  0.697
GCA_000380645_02136
Unannotated protein.
    
  0.697
GCA_000380645_05088
Unannotated protein.
  
 
 0.692
GCA_000380645_01829
Unannotated protein.
  
 
  0.684
GCA_000380645_00700
Unannotated protein.
  
 
 0.661
GCA_000380645_02425
Unannotated protein.
  
 
 0.661
GCA_000380645_03223
Unannotated protein.
  
 
 0.661
Your Current Organism:
Smaragdicoccus niigatensis
NCBI taxonomy Id: 1123258
Other names: S. niigatensis DSM 44881 = NBRC 103563, Smaragdicoccus niigatensis DSM 44881, Smaragdicoccus niigatensis DSM 44881 = NBRC 103563, Smaragdicoccus niigatensis NBRC 103563, Smaragdicoccus niigatensis NBRC 103563 = DSM 44881
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.