STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000380645_03919Unannotated protein. (463 aa)    
Predicted Functional Partners:
GCA_000380645_03365
Unannotated protein.
 
  
 0.719
GCA_000380645_03821
Unannotated protein.
  
 
 0.712
GCA_000380645_01825
Unannotated protein.
 
  
 0.704
GCA_000380645_02680
Unannotated protein.
  
 0.698
GCA_000380645_04071
Unannotated protein.
  
     0.692
GCA_000380645_03921
Unannotated protein.
  
  
  0.683
GCA_000380645_03315
Unannotated protein.
  
    0.676
GCA_000380645_04710
Unannotated protein.
  
 
  0.676
GCA_000380645_02509
Unannotated protein.
   
 0.638
GCA_000380645_03912
Unannotated protein.
  
 
  0.615
Your Current Organism:
Smaragdicoccus niigatensis
NCBI taxonomy Id: 1123258
Other names: S. niigatensis DSM 44881 = NBRC 103563, Smaragdicoccus niigatensis DSM 44881, Smaragdicoccus niigatensis DSM 44881 = NBRC 103563, Smaragdicoccus niigatensis NBRC 103563, Smaragdicoccus niigatensis NBRC 103563 = DSM 44881
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.