STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHE53041.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the HpcH/HpaI aldolase family. (278 aa)    
Predicted Functional Partners:
AHE53042.1
MaoC family dehydratase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.960
AHE53043.1
3-methylcrotonyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.894
AHE53045.1
isovaleryl-CoA dehydrogenase; Catalyzes the formation of 3-methylbut-2-enoyl CoA from 3-methylbutanoyl CoA; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.794
AHE53044.1
acetyl-CoA carboxylase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.736
AHE53858.1
methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.566
AHE52358.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.561
AHE55809.1
Membrane protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
    0.543
mtnB
Hypothetical protein; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Belongs to the aldolase class II family. MtnB subfamily.
   
    0.543
AHE51938.1
Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.515
AHE53046.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the LysR transcriptional regulatory family.
       0.472
Your Current Organism:
Sphingomonas sanxanigenens
NCBI taxonomy Id: 1123269
Other names: S. sanxanigenens DSM 19645 = NX02, Sphingomonas sanxanigenens DSM 19645, Sphingomonas sanxanigenens DSM 19645 = NX02, Sphingomonas sanxanigenens NX02
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.