STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIN60697.1Lipopolysaccharide export system ATP-binding protein. (271 aa)    
Predicted Functional Partners:
SIN59521.1
Lipopolysaccharide export system permease protein.
 
 
 0.995
SIN59520.1
Lipopolysaccharide export system permease protein.
 
 
 0.988
SIN60814.1
ABC-2 type transport system permease protein.
 
   
  0.931
SIN60817.1
ABC-2 type transport system permease protein.
 
   
  0.897
SIN60017.1
Lipopolysaccharide export system protein LptA.
  
  
 0.859
SIO17103.1
Biopolymer transport protein TolQ.
  
     0.731
bamA
Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
  
 0.594
SIN69069.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
  
  0.589
SIN65858.1
Outer membrane transport energization protein ExbB (TC 2.C.1.1.1).
  
     0.520
SIN60692.1
Protein CcmA, bactofilin family.
       0.511
Your Current Organism:
Sphingorhabdus marina
NCBI taxonomy Id: 1123272
Other names: S. marina DSM 22363, Sphingopyxis marina DSM 22363, Sphingopyxis marina FR1087, Sphingopyxis marina JCM 14161, Sphingopyxis sp. FR1087, Sphingorhabdus marina DSM 22363
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.