STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIN65858.1Outer membrane transport energization protein ExbB (TC 2.C.1.1.1). (249 aa)    
Predicted Functional Partners:
SIN65866.1
Outer membrane transport energization protein ExbD (TC 2.C.1.1.1).
 
 
 0.984
SIN65876.1
Outer membrane transport energization protein ExbD (TC 2.C.1.1.1).
 
 
 0.981
SIO17131.1
Biopolymer transport protein TolR.
 
 
 0.955
SIN65847.1
Outer membrane transport energization protein TonB.
 
 
 0.947
SIN59501.1
Biopolymer transport protein ExbD.
 
 
 0.926
bamA
Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.707
SIO00254.1
Lipoprotein-releasing system permease protein.
 
    0.703
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
   
 0.703
SIN60651.1
Protein TonB.
 
 
 0.645
SIN59981.1
TonB family C-terminal domain-containing protein.
  
 
 0.644
Your Current Organism:
Sphingorhabdus marina
NCBI taxonomy Id: 1123272
Other names: S. marina DSM 22363, Sphingopyxis marina DSM 22363, Sphingopyxis marina FR1087, Sphingopyxis marina JCM 14161, Sphingopyxis sp. FR1087, Sphingorhabdus marina DSM 22363
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.