STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIN66200.1Phytanoyl-CoA dioxygenase (PhyH). (259 aa)    
Predicted Functional Partners:
SIN66210.1
Hypothetical protein.
       0.559
SIN59660.1
FAD/FMN-containing dehydrogenase.
   
  0.518
SIN64036.1
FAD/FMN-containing dehydrogenase.
   
  0.518
SIN69519.1
FAD/FMN-containing dehydrogenase.
   
  0.518
SIN59680.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
  0.469
SIN60354.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
  0.469
SIN61209.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
  0.469
SIN61242.1
acetyl-CoA C-acetyltransferase.
   
 
  0.469
SIN62616.1
Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
  0.469
SIN67578.1
3-oxo-5,6-didehydrosuberyl-CoA/3-oxoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
  0.469
Your Current Organism:
Sphingorhabdus marina
NCBI taxonomy Id: 1123272
Other names: S. marina DSM 22363, Sphingopyxis marina DSM 22363, Sphingopyxis marina FR1087, Sphingopyxis marina JCM 14161, Sphingopyxis sp. FR1087, Sphingorhabdus marina DSM 22363
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