STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIN68306.1Aspartate aminotransferase. (396 aa)    
Predicted Functional Partners:
SIN86597.1
Phenylalanine 4-hydroxylase.
  
 
 0.935
SIN61260.1
4-hydroxyphenylpyruvate dioxygenase.
  
 
 0.933
SIN59835.1
Prephenate dehydratase.
    
 0.916
SIN59911.1
Glutamate synthase (NADPH) large subunit.
    
 0.912
SIN68569.1
Aspartate aminotransferase.
   
 0.901
SIN60548.1
Cyclohexadieny/prephenate dehydrogenase.
    
 0.894
SIN88012.1
GAF domain-containing protein.
 
  
  0.892
hisC
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
   
 
 0.891
SIO07590.1
Chorismate mutase.
    
 0.890
SIN69036.1
Methionine-gamma-lyase.
     
 0.883
Your Current Organism:
Sphingorhabdus marina
NCBI taxonomy Id: 1123272
Other names: S. marina DSM 22363, Sphingopyxis marina DSM 22363, Sphingopyxis marina FR1087, Sphingopyxis marina JCM 14161, Sphingopyxis sp. FR1087, Sphingorhabdus marina DSM 22363
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.