STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIN82412.1MFS transporter, ACS family, hexuronate transporter. (429 aa)    
Predicted Functional Partners:
SIN82360.1
poly(beta-D-mannuronate) lyase.
 
    0.949
SIN82376.1
Alginate lyase.
 
    0.949
SIN82394.1
Cupin domain-containing protein.
 
     0.940
SIN82429.1
3-oxoacyl-[acyl-carrier protein] reductase.
 
    0.901
SIN82343.1
TonB-dependent receptor.
 
    0.850
SIN82324.1
DNA-binding transcriptional regulator, FadR family.
 
     0.810
SIN82305.1
TonB-dependent receptor.
 
    0.790
SIN82465.1
2-dehydro-3-deoxygluconokinase.
 
     0.721
SIN82447.1
2-dehydro-3-deoxyphosphogluconate aldolase / (4S)-4-hydroxy-2-oxoglutarate aldolase.
     
 0.607
SIN65508.1
Benzoate transport.
  
  
  0.445
Your Current Organism:
Sphingorhabdus marina
NCBI taxonomy Id: 1123272
Other names: S. marina DSM 22363, Sphingopyxis marina DSM 22363, Sphingopyxis marina FR1087, Sphingopyxis marina JCM 14161, Sphingopyxis sp. FR1087, Sphingorhabdus marina DSM 22363
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.