STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIN87876.13-hydroxyisobutyrate dehydrogenase. (291 aa)    
Predicted Functional Partners:
SIO10141.1
Malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase.
 
 
  0.930
SIO10010.1
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
  
  
 
0.896
SIO22646.1
Coniferyl-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
  0.880
SIN96813.1
Biotin carboxyl carrier protein/biotin carboxylase.
   
 
  0.878
SIN64009.1
propionyl-CoA synthetase.
  
 
  0.873
SIN87903.1
Hypothetical protein.
    
  0.807
SIN88799.1
Glyoxylate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.732
SIN87848.1
L-threonine ammonia-lyase.
       0.635
SIN63410.1
3-hydroxybutyryl-CoA dehydrogenase.
     
 0.602
SIN65281.1
2-keto-3-deoxy-L-rhamnonate aldolase RhmA; Belongs to the HpcH/HpaI aldolase family.
  
 
  0.592
Your Current Organism:
Sphingorhabdus marina
NCBI taxonomy Id: 1123272
Other names: S. marina DSM 22363, Sphingopyxis marina DSM 22363, Sphingopyxis marina FR1087, Sphingopyxis marina JCM 14161, Sphingopyxis sp. FR1087, Sphingorhabdus marina DSM 22363
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