STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO12506.1Mannose-6-phosphate isomerase, cupin superfamily. (126 aa)    
Predicted Functional Partners:
SIN87230.1
Sugar transferase, PEP-CTERM system associated/exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
 
 0.820
SIO12533.1
Transcriptional regulator, BolA protein family; Belongs to the BolA/IbaG family.
       0.773
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
     
 0.658
SIN60073.1
Phosphomannomutase.
  
 
 0.616
SIO22021.1
UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase.
  
 
 0.582
SIO12555.1
DnaJ domain-containing protein.
       0.555
SIN82394.1
Cupin domain-containing protein.
  
  0.502
SIO12577.1
Cobaltochelatase CobS subunit.
       0.443
SIN62306.1
Hypothetical protein.
  
  0.410
SIN65442.1
BNR/Asp-box repeat-containing protein.
  
     0.410
Your Current Organism:
Sphingorhabdus marina
NCBI taxonomy Id: 1123272
Other names: S. marina DSM 22363, Sphingopyxis marina DSM 22363, Sphingopyxis marina FR1087, Sphingopyxis marina JCM 14161, Sphingopyxis sp. FR1087, Sphingorhabdus marina DSM 22363
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.