STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIO20269.1L-alanine-DL-glutamate epimerase. (330 aa)    
Predicted Functional Partners:
SIO20244.1
Uncharacterized conserved protein, NAD-dependent epimerase/dehydratase family.
 
     0.962
SIN67545.1
Catechol 1,2-dioxygenase.
  
 
 0.774
SIN64620.1
Sugar lactone lactonase YvrE.
    
 0.630
SIO20293.1
Uncharacterized conserved protein, DUF1499 family.
       0.598
SIO20198.1
N-acylneuraminate cytidylyltransferase.
       0.541
SIO20219.1
Haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.
       0.541
SIN86913.1
L-lactate dehydrogenase (cytochrome).
 
  
 0.494
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
    
 0.472
SIO20175.1
Hypothetical protein.
       0.467
SIO15724.1
L,D-transpeptidase catalytic domain.
 
     0.462
Your Current Organism:
Sphingorhabdus marina
NCBI taxonomy Id: 1123272
Other names: S. marina DSM 22363, Sphingopyxis marina DSM 22363, Sphingopyxis marina FR1087, Sphingopyxis marina JCM 14161, Sphingopyxis sp. FR1087, Sphingorhabdus marina DSM 22363
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