STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000378205_01120Unannotated protein. (372 aa)    
Predicted Functional Partners:
GCA_000378205_03766
Unannotated protein.
  
  
  0.834
GCA_000378205_01305
Unannotated protein.
  
   
 0.805
GCA_000378205_01096
Unannotated protein.
  
  
 0.797
GCA_000378205_03605
Unannotated protein.
  
  
  0.777
GCA_000378205_03320
Unannotated protein.
 
     0.776
GCA_000378205_00907
Unannotated protein.
  
     0.774
GCA_000378205_03772
Unannotated protein.
  
     0.774
GCA_000378205_00465
Unannotated protein.
  
     0.773
GCA_000378205_00608
Unannotated protein.
  
     0.773
GCA_000378205_00613
Unannotated protein.
  
     0.773
Your Current Organism:
Sediminispirochaeta bajacaliforniensis
NCBI taxonomy Id: 1123274
Other names: S. bajacaliforniensis DSM 16054, Sediminispirochaeta bajacaliforniensis DSM 16054, Spirochaeta bajacaliforniensis DSM 16054
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.