STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000378205_03104Unannotated protein. (166 aa)    
Predicted Functional Partners:
GCA_000378205_03108
Unannotated protein.
 
     0.841
GCA_000378205_03105
Unannotated protein.
       0.783
GCA_000378205_03621
Unannotated protein.
  
     0.764
GCA_000378205_03694
Unannotated protein.
  
     0.756
GCA_000378205_01255
Unannotated protein.
  
     0.754
GCA_000378205_03623
Unannotated protein.
  
     0.752
GCA_000378205_03620
Unannotated protein.
  
     0.751
GCA_000378205_00771
Unannotated protein.
  
     0.744
GCA_000378205_01096
Unannotated protein.
  
     0.744
GCA_000378205_00750
Unannotated protein.
  
     0.741
Your Current Organism:
Sediminispirochaeta bajacaliforniensis
NCBI taxonomy Id: 1123274
Other names: S. bajacaliforniensis DSM 16054, Sediminispirochaeta bajacaliforniensis DSM 16054, Spirochaeta bajacaliforniensis DSM 16054
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.