STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000378205_03236Unannotated protein. (98 aa)    
Predicted Functional Partners:
GCA_000378205_03232
Unannotated protein.
 
     0.912
GCA_000378205_03233
Unannotated protein.
 
     0.815
GCA_000378205_03235
Unannotated protein.
 
     0.808
GCA_000378205_03234
Unannotated protein.
 
     0.767
GCA_000378205_01071
Unannotated protein.
  
     0.751
GCA_000378205_03231
Unannotated protein.
 
     0.751
GCA_000378205_02105
Unannotated protein.
  
     0.717
GCA_000378205_03230
Unannotated protein.
       0.693
GCA_000378205_00937
Unannotated protein.
  
     0.688
GCA_000378205_00625
Unannotated protein.
  
     0.684
Your Current Organism:
Sediminispirochaeta bajacaliforniensis
NCBI taxonomy Id: 1123274
Other names: S. bajacaliforniensis DSM 16054, Sediminispirochaeta bajacaliforniensis DSM 16054, Spirochaeta bajacaliforniensis DSM 16054
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.