STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI00407.1Hypothetical protein. (271 aa)    
Predicted Functional Partners:
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
      0.896
SHI00424.1
Transcriptional regulator PadR-like family protein.
       0.779
SHH89547.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.713
SHI18316.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.713
SHI00441.1
Aspartate aminotransferase.
  
    0.596
SHH45101.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.589
SHI18489.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.589
SHI00387.1
Stage V sporulation protein S.
       0.580
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
 
     0.438
rny
Ribonucrease Y; Endoribonuclease that initiates mRNA decay.
       0.424
Your Current Organism:
Sporanaerobacter acetigenes
NCBI taxonomy Id: 1123281
Other names: S. acetigenes DSM 13106, Sporanaerobacter acetigenes DSM 13106
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.