STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH96978.1Transcriptional regulator, RpiR family. (291 aa)    
Predicted Functional Partners:
SHH96991.1
Putative hydrolase of the HAD superfamily.
    
  0.868
SHH76442.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.789
SHH96950.1
Peptide/nickel transport system substrate-binding protein.
 
     0.769
SHH96964.1
Ribonuclease BN, tRNA processing enzyme.
       0.728
SHH96935.1
Peptide/nickel transport system permease protein.
       0.723
SHI07539.1
Mannose-1-phosphate guanylyltransferase / phosphomannomutase.
    
 0.644
SHH96920.1
Peptide/nickel transport system permease protein.
       0.619
SHH96878.1
Putative phosphoesterase.
       0.615
SHH96893.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.615
SHH96906.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.615
Your Current Organism:
Sporobacter termitidis
NCBI taxonomy Id: 1123282
Other names: S. termitidis DSM 10068, Sporobacter termitidis DSM 10068
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.