SHI01710.1 protein (Sporobacter termitidis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHI01710.1

Aromatic ring-opening dioxygenase, catalytic subunit, LigB family. (256 aa)

Predicted Functional Partners:

ribBA

0.627

SHI13214.1

0.577

SHH77793.1

0.495

SHI01725.1

0.473

SHH82916.1

0.448

SHH73091.1

0.437

SHI04018.1

0.437

SHI23302.1

0.421

SHH95314.1

0.410

Your Current Organism:

Sporobacter termitidis

NCBI taxonomy Id: 1123282
Other names: S. termitidis DSM 10068, Sporobacter termitidis DSM 10068

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHH73091.1	SHH77793.1	SAMN02745823_00767	SAMN02745823_00979	Kynurenine formamidase.	Formate dehydrogenase major subunit.	0.777
SHH73091.1	SHI01710.1	SAMN02745823_00767	SAMN02745823_01924	Kynurenine formamidase.	Aromatic ring-opening dioxygenase, catalytic subunit, LigB family.	0.437
SHH73091.1	SHI04018.1	SAMN02745823_00767	SAMN02745823_02090	Kynurenine formamidase.	Kynurenine formamidase.	0.700
SHH77793.1	SHH73091.1	SAMN02745823_00979	SAMN02745823_00767	Formate dehydrogenase major subunit.	Kynurenine formamidase.	0.777
SHH77793.1	SHH82916.1	SAMN02745823_00979	SAMN02745823_01084	Formate dehydrogenase major subunit.	NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.	0.934
SHH77793.1	SHH95314.1	SAMN02745823_00979	SAMN02745823_01644	Formate dehydrogenase major subunit.	Flavin reductase like domain-containing protein.	0.719
SHH77793.1	SHI01710.1	SAMN02745823_00979	SAMN02745823_01924	Formate dehydrogenase major subunit.	Aromatic ring-opening dioxygenase, catalytic subunit, LigB family.	0.495
SHH77793.1	SHI01725.1	SAMN02745823_00979	SAMN02745823_01925	Formate dehydrogenase major subunit.	Glyoxylase, beta-lactamase superfamily II.	0.611
SHH77793.1	SHI04018.1	SAMN02745823_00979	SAMN02745823_02090	Formate dehydrogenase major subunit.	Kynurenine formamidase.	0.777
SHH77793.1	SHI23302.1	SAMN02745823_00979	SAMN02745823_03698	Formate dehydrogenase major subunit.	Rubredoxin.	0.838
SHH77793.1	ribBA	SAMN02745823_00979	SAMN02745823_01988	Formate dehydrogenase major subunit.	3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.899
SHH82916.1	SHH77793.1	SAMN02745823_01084	SAMN02745823_00979	NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.	Formate dehydrogenase major subunit.	0.934
SHH82916.1	SHI01710.1	SAMN02745823_01084	SAMN02745823_01924	NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.	Aromatic ring-opening dioxygenase, catalytic subunit, LigB family.	0.448
SHH82916.1	SHI23302.1	SAMN02745823_01084	SAMN02745823_03698	NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.	Rubredoxin.	0.683
SHH82916.1	ribBA	SAMN02745823_01084	SAMN02745823_01988	NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.	3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.688
SHH95314.1	SHH77793.1	SAMN02745823_01644	SAMN02745823_00979	Flavin reductase like domain-containing protein.	Formate dehydrogenase major subunit.	0.719
SHH95314.1	SHI01710.1	SAMN02745823_01644	SAMN02745823_01924	Flavin reductase like domain-containing protein.	Aromatic ring-opening dioxygenase, catalytic subunit, LigB family.	0.410
SHH95314.1	ribBA	SAMN02745823_01644	SAMN02745823_01988	Flavin reductase like domain-containing protein.	3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.	0.528
SHI01710.1	SHH73091.1	SAMN02745823_01924	SAMN02745823_00767	Aromatic ring-opening dioxygenase, catalytic subunit, LigB family.	Kynurenine formamidase.	0.437
SHI01710.1	SHH77793.1	SAMN02745823_01924	SAMN02745823_00979	Aromatic ring-opening dioxygenase, catalytic subunit, LigB family.	Formate dehydrogenase major subunit.	0.495