STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EQB28399.1DegT/DnrJ/EryC1/StrS aminotransferase. (319 aa)    
Predicted Functional Partners:
amsG
UDP-galactose-lipid carrier transferase.
  
 
 0.896
epsN
Putative pyridoxal phosphate-dependent aminotransferase EpsN.
 
     0.833
capD1
Capsular polysaccharide biosynthesis protein CapD.
 
 
 0.791
EQB28387.1
Acetyltransferase; Isoleucine patch superfamily.
  
 
 0.791
rffA
Lipopolysaccharide biosynthesis protein RffA.
  
     0.768
EQB26366.1
Oxidoreductase domain containing protein.
 
 
 0.757
EQB26498.1
Hypothetical protein.
 
 
 0.756
EQB26362.1
Putative nucleoside-diphosphate sugar epimerase.
 
 
 0.748
rfbB
dTDP-glucose 4,6-dehydratase.
  
 
 0.735
rffG
dTDP-glucose 4,6-dehydratase 2.
  
 
 0.735
Your Current Organism:
Sporomusa ovata
NCBI taxonomy Id: 1123288
Other names: S. ovata DSM 2662, Sporomusa ovata DSM 2662
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.