STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIIIABStage III sporulation protein AB. (172 aa)    
Predicted Functional Partners:
spoIIIAA
Stage III sporulation protein AA.
 
  
 0.995
spoIIIAC
Stage III sporulation protein AC.
 
  
 0.969
spoIIIAE
Stage III sporulation protein AE.
 
  
 0.963
spoIIIAD
Stage III sporulation protein AD.
 
  
 0.957
spoIIIAG
Stage III sporulation protein AG.
 
  
 0.954
spoIIIAF
Stage III sporulation protein AF.
 
  
 0.951
spoIIM
Stage II sporulation protein M.
  
  
 0.877
spoIIIAH
Stage III sporulation protein AH.
 
  
 0.868
yqfC
Sporulation protein YqfC.
  
  
 0.806
lon1
Lon protease.
  
    0.798
Your Current Organism:
Sporomusa ovata
NCBI taxonomy Id: 1123288
Other names: S. ovata DSM 2662, Sporomusa ovata DSM 2662
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.