STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cynRUnannotated protein; Belongs to the LysR transcriptional regulatory family. (301 aa)    
Predicted Functional Partners:
iolS
Unannotated protein.
 
     0.507
oxyR
Unannotated protein; Belongs to the LysR transcriptional regulatory family.
  
     0.507
porA
Unannotated protein.
   
 
 0.494
GCA_000380065_00234
Unannotated protein.
 
     0.432
potA
Unannotated protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
 
 0.416
tetD_1
Unannotated protein.
  
  
 0.404
Your Current Organism:
Streptococcus massiliensis
NCBI taxonomy Id: 1123307
Other names: S. massiliensis DSM 18628, Streptococcus massiliensis DSM 18628
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.